INTRODUCTION –
Rapid advancements in the field of Biotechnology require understanding of underlying principles of how the basic techniques are involved in Molecular Biology. Expertise on basic Molecular Biological techniques is considered essential for pursuing advanced level research in this exciting field. In order to keep high academic standard, it is mandatory to know tools and techniques used for exploration of living system. The major objective during the summer internship was to deal with the molecular biology techniques. Molecular biology is the study of science that deals with the molecular basis of biological activity. Many advances
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DNA extraction of Litsea glutinosa,
2. Purification and quantitation,
3. Agarose gel electrophoresis, &
4. Polymerase chain reaction. For genomic DNA extraction protocol of the Deshmukh et al. (2007) will be used. This protocol is based on the SDS and suitable for species having higher amounts of secondary metabolites, gums and resins. Genomic DNA of Litsea glutinosa will be extracted. The DNA concentration plays an very important role in many applications in molecular biology like complete digestion of DNA by restriction enzymes and amplification of target DNA by polymerase chain reaction. To measure the quantity of DNA, It is generally carried out mainly by 2 methods- 1. Spectrophotometric and
2. Ethidium bromide fluorescence. In Spectrophotometric method, an absorbance ratio of 260 nm and280 nm gives an estimate of the purity of the solution.Pure DNA and RNA solutions have optical density 260 & 280 nm which have values of 1.8 and 2.0, respectively. Therefore a ratio higher than 1.8 indicates RNA contamination and a ratio lower than 1.8 indicates protein
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The species from different locations was taken to examine each and every aspect related to the plants and its functional properties
1. DNA EXTRACTION -
The protocol of Deshmukh et al. (2007) was followed.This protocol is based on SDS and suitable for this plant.The leaves of Litsea glutinosa are crushed with the help of liquid nitrogen for the better results. This plant contains secondary metabolites and high amount of gums and resins.The genomic DNA isolation needs to separate total DNA and RNA, protein, lipid etc..Initially the cell membrane must be disrupted for successful release of DNA in extraction buffer.SDS disrupt the cell membrane. 2. PURIFICATION AND QUANTITATION OF EXTRACTED DNA-
In the Spectrophotometric method, an absorbance ratio of 260 and 280 nm estimate the purity of DNA. The A260/A280 RATIO around 1.8 (1.75-1.85) indicates best quality DNA.As per expectation ,after RNAs treatment the yield of DNA was slightly declined in methods other than Deshmukh et al. (2007) as in this method yield is
The Solid sequencing platform, produced by Technologies/Applied Biosystems (ABI), performs sequencing by ligation method. Similar like the Roche 454 library preparation, genomic double strand DNA were sheared into small pieces and ligated with two types of adatptors P1 and P2 on two ends. One end with P1 adaptor binds onto the surface of the magnetic bead and emulsion PCR takes place to amplify single nucleotide fragment. Then the oil was washed out and four fluorescent labeled di-bases probes were added into the beads mixture. By matching the 1st and 2nd position of the template by di-base probes, fluorescence was detected and the extra tail with fluorescent probe is cleaved out.
Both DNA and RNA has a maximum absorbance of 260 nm. The absorbance of 260/280 should be in between 1.8 and 1.9 to represent a pure sample of DNA. If the reading is higher than 1.9 then there is RNA contamination and if the reading is less than 1.8 there is protein contamination.
Introduction A mutation is a heritable change that is passed from the mother cell to progeny cells. Mutations may lead to good, bad or neutral phenotypic changes in the organism. They may occur spontaneously as in random DNA replicative errors or may be induced by mutagenic chemicals or radiation. Besides mutations, another way that bacteria achieve gene diversity is through the three known mechanisms for intercellular gene transfer.
The way plants are able to provide the entire food chain with nucleic acids is that because of the phosphorous and nitrogen cycle, it is able to absorb these two elements and create its own nucleic
DIY - What Is Life? How can you determine whether something is alive, dead, or non-living? Whenever we speak of life, we must think in terms of cells.
Introduction The purpose of this lab is to use control variables to help identify different macromolecules. Biological systems are made up of these four major macromolecules: carbohydrates, lipids, proteins and nucleic acids. Carbohydrates are sugar molecules (monosaccharides, disaccharides, and polysaccharides) which make them the most abundant macromolecule on the earth. Lipids (oils and fats, phospholipids and steroids) are insoluble in water and perform many functions such as energy source, essential nutrients, hormones and insulators (Lehman, 1955).
The purpose of this lab is to determine the relationship that exists between the number of amylase gene copies and ancestral diet. As the human civilization moved forward toward agriculture the diets of humans also changed. Depending on where the humans originated would give insight to how much of their diet was starch based. My family’s geographic origins are from China. Thus knowing that the country has a high starch based diet, we would suggest that I would have a high amylase production.
The 9th lane showed up bright light colour which means Cauliflower DNA sample has DNA in it, but both 8th and 9th lanes are expected to show bright
The unknown #257 tested positive for the enzyme DNase. Lastly, Mannitol Salt Agar (MSA) was used to test for isolation and differentiation. The streaking technique used is streaking for isolation. The unknown #257 tested positive for mannitol fermentation which means the organism is
1.1 Abstract The purpose of quantitative analysis of protein using a spectrophotometer is to measure the concentration of proteins in a given sample. The experiment is conducted by laboratory method (Biuret Test) and using spectrophotometer to analyze the absorbance of reactants at 540 nm, hence determining the concentration of the proteins in a given sample. The purpose of stopped enzyme assay to study B-galactosidase is to determine the effect of temperature and concentrations of substrate on enzyme activity.
Abstract In this experiment, the isolation, characterization, and determination of concentration and purity of deoxyribonucleic acid or DNA from Allium Cepa or onion was performed. DNA was isolated through the use of a homogenizing solution. The absorbance ratio was 1.5, which indicates protein contamination. Moreover, the characterization of its components was conducted through the use of different chemical tests.
Undoubtedly, this recent development has led to accelerated advancements
Finally, the amplified DNA regions are compare using a gel. DNA Profiling