OCCURRENCE OF SHV GENE AND ANTIBIOGRAM OF KLEBSIELLA PNEUMONIAE INFECTION IN SWISS ALBINO MICE COLONY M. Thangapandiyan*, S.P. Preetha, S. SureshKannan and T. Mohanapriya Department of Veterinary Pathology, Madras Veterinary College, Tamil Nadu Veterinary and Animal Sciences University, Chennai – 600 051, India. *Corresponding author Email: sugigold@gmail.com ABSTRACT: An epizootic causing high morbidity and high mortality in Swiss albino inbred mice over a period of two weeks caused by Klebsiella pneumoniae is reported. Diagnosis was based on clinical signs, histopathological, bacteriological evaluation of the lung, kidney and intestinal tissue and multiplex PCR. Biochemical tests were positive for citrate, nitrate, urease, lysine decarboxylase, …show more content…
Equal volume of chloroform:isoamyl alcohol (24:1 v/v) was added, centrifuged at 8000 g for 15 min. The upper layer was used as crude DNA. Amplification reactions for SHV gene was performed in a 25 µl of 10X PCR reaction buffer with Mgcl2 (15mM), 0.5 µl (200µM), deoxynucleoside triphosphate mix (dNTPs, 10mM), 0.5 µl of the primer (10pm/µl) with 0.5 µl (3U/ µl) Taq DNA polymerase (Bangalore Genie, India). Five microlitres of the template DNA preparation was added to the reaction mixture and was carried out on My Cycler DNA thermal cycler (BioRad, Australia). After initial denaturation at 94˚C for 2 min, reaction was performed in a 3 step cycling condition of denaturation for 25 cycles of 1 min at 95˚C, annealing at 52˚C for 55 sec and extension at 72˚C for 45 sec. Final extension was carried out at 72˚C for 5 min. The resulting products were analysed by electrophoresis with 1.5% agarose gels in Tris-borate-EDTA buffer (TBE; Gibco, NY, USA). The gels were stained with ethidium bromide and the band observed at the desired position was photographed on an ultraviolet light transilluminator
The Solid sequencing platform, produced by Technologies/Applied Biosystems (ABI), performs sequencing by ligation method. Similar like the Roche 454 library preparation, genomic double strand DNA were sheared into small pieces and ligated with two types of adatptors P1 and P2 on two ends. One end with P1 adaptor binds onto the surface of the magnetic bead and emulsion PCR takes place to amplify single nucleotide fragment. Then the oil was washed out and four fluorescent labeled di-bases probes were added into the beads mixture. By matching the 1st and 2nd position of the template by di-base probes, fluorescence was detected and the extra tail with fluorescent probe is cleaved out.
It was noted that the claimant presented to the ER with complaints of a headache and fever. Urinalysis showed urine pH of 8.0 with squamous epithelial cells of 31-50/LPF. She had elevated glucose at 126 with low levels of BUN at 6, potassium at 3.3, sodium at 135, and chloride at 95. She was diagnosed with a viral syndrome. Zofran and a follow-up visit were recommended.
Discussion PV92 Gel Electrophoresis Results: Through the usage of gel electrophoresis the correct allele for each sample was able to be determined. Lanes one through three in the gel,were the positive control lanes they contained the PCR cocktail and a known high-quality template for the PCR reaction. First lane contained the sample with the +/+ allele, which had two copies of the ALU repeat allele. The first lane had a band at about 941 base pairs.
He said he looked up on WebMD and has been using cool baths and calamine lotion, which he does think is helpful. He has not had any fevers, chills, or body aches. No nausea, vomiting, or diarrhea and he is otherwise feeling well. The patient was last seen in the office in July 2013 by my colleague, when he was ill.
Reactions were performed in a 96-well DNA thermo cycler (Eppendorf Mastercycler, Germany) using the following reaction mixture: • 2.0 μl of genomic DNA (10 ng/μl) • 1.5 μl of 10x PCR buffer (NH4 Reaction buffer, Bioline) • 1.5 μl of dNTPs (0.2 mM) • 0.9 μl of 50 mM MgCl2 (Bioline) • 0.9 μl of each forward and reverse primer (2 mM) • 0.15 μl (5 u/μl) of Taq DNA (Bioline, Australia) • 7.15 μl of
Clostridium perfringens Clostridium perfringens is a bacteria which are Gram-positive, endospore-forming anaerobes, that appear to be rod-shaped. They lack flagella, but they can still migrate across surfaces using a type of gliding motility that involves the formation of filaments of bacteria lined up in an end-to-end conformation. Clostridium perfringens bacteria is most commonly found in soil, and it the intestinal tracts of humans and animals. (1,2) C. perfringens most commonly causes food poisoning, and various types of gangrene, infections from this bacteria can cause necrosis, bacteremia, and emphysematous cholecystitis. Back before the 1890’s Clostridium perfringens used to be known as Clostridium welchii.
Strep throat is a bacterial infection that affects people of all ages which causes inflammation and pain in the throat. Strep throat is highly contagious and can easily be spread from one person to another through airborne droplets (coughing and sneezing), kissing with someone who’s infected and through shared food and drinks. This condition is caused by group A Streptococcus. The signs and symptoms for strep throat may vary from person-to-person.
The presentation that will be presented is about bacteria infecting young children especially in Nursery or Day-care facilities, named as Kingella kingae. This presentation is strongly related to the Diagnostic microbiology course, because it is widely spread among children with immature immunity and it can cause lots of diseases that still microbiologists are discovering in a daily basis. During the past ten years, Kingella kingae transmission has increased and led to many serious infections like: septic arthritis, bacteremia, osteomyelitis, and a lot more. Most of these cases were detected among children in Day-Care centers specifically in US and France, and at that period of time medical microbiologists did not focus on it yet.
It evolves rapidly due to high mutation rate and also may escape acquired immunity. Due to that, it can be so severe that it can result in death especially knowing that the virus itself can lead to severe pneumonia which often
Pseudomonas aeruginosa and Chronic Lung Infection of Cystic Fibrosis Patients Valerie R. Vorndran Pueblo Community College Abstract Cystic Fibrosis is a genetically inherited autosomal disease that affects the ability to clear mucus from the airway. Mucus accumulation in the lungs and airway increases susceptibility to opportunistic pathogens such as, Pseudomonas aeruginosa. Airway bacterial infection and eventually chronic lung infection is the primary cause of death in people with CF. P. aeruginosa ability to mutate, transfer genes, produce alginate, and toxins all contribute to it virulence and ability to cause chronic lung infection in CF patients.
Once the program was run, the machine began its thirty-five PCR cycles. Each step in these three step cycles is defined by a specific time span and temperature. However, before the first cycle begins, initial DNA denaturation occurred for five minutes at a temperature of 95 oC in order to ensure that all the DNA had become single-stranded. After this initial denaturation, the thirty-five PCR cycles could begin, first with thirty seconds of DNA denaturation at 95 oC, then followed by a drop of temperature to 58 oC for thirty seconds for the primers to anneal to its target sequence on the template DNA, and finally thirty seconds at 72 oC for primer extension in which DNA synthesis is carried out by Taq Polymerase. After the thirty-five cycles were complete, there was an additional five minutes at 72 oC for the final extension of the DNA to ensure that all synthesis had been completed.
After a gram stain was done unknown #257 was identified as a gram positive organism because when observed under the microscope the organism appeared purple with cocci in clusters. The organism was also catalase positive which means that it produced enzyme catalase and bubbled when hydrogen peroxide was added to it. Three test were conducted based on the result of the gram staining procedure. Blood agar with a Novobiocin disk was chosen as well as DNase (DNA) and Mannitol Salts (MSA) agar. The Blood agar is a bright red, opaque plate and the streaking or the inoculation technique was a modified streaking for isolation with a heavy quadrant one.
The DNA gathered by the group bore positive results only on Test for Deoxyribose; compared to the standard solution, which bore positive results on all chemical tests, namely, Test for Deoxyribose, Test for Phosphate, Test for Purines, and test for Pyrimidines. Introduction Nucleic Acid is one of the essential biochemical molecules
Nguyen Nguyen Professor Microbiology 1 May 18th, 2016 01MW – Staphylococcus Epidermidis The Staphylococcus Epidermidis is classified as bacteria. Scientists reckon it to Firmicutes phylum and adjust it in Bacillales order of Bacilli class. This bacteria belongs to Staphylococcaceae family.
Finally, the amplified DNA regions are compare using a gel. DNA Profiling