2.0 LITERATURE REVIEW
2.1 Heterocyclic compound
2.1.1 Carbazole
Carbazole is an aromatic heterocyclic organic compound. This compound has a tricyclic structure, comprising of two six membered benzene ring fused on either side of a five membered nitrogen-containing ring. The structure of compound is based on the indole structure in which a second benzene ring is fused onto the five-membered ring at the 2–3 position of indole (equivalent to the 4a–9a double bond in carbazole) (Nandy et al., 2014). Using conventional physico-chemical techniques is hard to remove this heterocyclic compound, is considered as the model compound in most of the denitrogenation studies and is produced during coal gasification (Liu et al., 2009). Several thousand tons
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A number of carbazole degrading bacteria have been isolated and characterized including; Sphingomonas sp. GTIN11 by Kilbane et al. (2000); Pseudomonas sp. CA06 by Ouchiyama et al. (1993); Klebsiella sp. LSSE-H2 by Li et al. (2008) and Nocardioides aromaticivorans IC177 by Inoue et al. (2006). These finding show that carbazole degrading bacteria can be found in different genera (Farajzadeh & Karbalaei-Heidari, 2012). Interests in microbial degradation and transformation of carbazole have been growing for the past few years. Two bacterial strains were obtained that can degrade carbazole by a similar pathway which are Sphingomonas (Gai et al., 2007) and Pseudomonas (Li et al., 2006). The similar pathway which carbazole is firstly attacked at the angular position by dioxygenation, followed by of the dihydroxylated intermediate spontaneous conversion to 2-aminobiphenyl-2,3-diol. Then, the hydroxylated ring at the meta position attacked by an extradiol dioxygenase to give 2-hydroxy-6-(2-aminophenyl)-6-oxo- 2,4-hexadienoic acid. Anthranilic acid is produce resulting from hydrolysing of meta-cleavage, which is then totally mineralized (Gai et al., 2007; Wang et al., …show more content…
(1998) Gram staining is a technique of differentiating bacterial species into two large groups which are gram-positive and gram-negative. The name of this technique was comes from Hans Christian Gram that invented it. Gram staining differentiates bacteria by the chemical and physical properties of their cell walls by detecting peptidoglycan, which is present in a thick layer in gram-positive bacteria. The Gram stain is essential to the bacteria phenotypic characterization. The procedure of staining will distinguishes organisms of the domain bacteria according to structure of cell wall. A thick peptidoglycan layer and stain blue to purple indicate as the Gram-positive cells while a thin peptidoglycan layer and stain red to pink indicate as Gram-negative cells. In bacteriology, the most frequently used staining procedure is the Gram stain, is a complex and differential staining procedure. Organisms in the Domain Bacteria are differentiated according to cell wall composition over and done with a series of staining and decolorization steps. Cell walls of Gram-positive bacteria contain thick layers of peptidoglycan which 90% of cell wall and this stain are purple. Cell walls of Gram-negative bacteria have thin layers of peptidoglycan which 10% of wall, and high lipid content. These stain pink. Archeae or Eukaryotes phenotypic characterization not used staining procedure because both lack peptidoglycan. Applying a primary stain (crystal violet) to a
Identification of bacteria within Unknown Culture #21 In this experiment, an unknown culture of two different types of bacteria was assigned to each person, a number of tests were performed to isolate and identify these bacterial cells. Based on knowledge from the previous experiments completed in lab, a basic understanding of each type of bacteria was used to create a flow chart that would aid the process of identifying the unknown bacteria within the culture. A gram stain that is performed initially will narrow down the types of tests certain bacteria will and will not respond to. In addition to the gram stain, some of the tests that were used include, a catalase test, an Eosin methylene blue (EMB) agar test, a bile esculin test, and a 6.5% sodium chloride (NaCl) test.
The purpose of this lab report is to employ a myriad of skills, tools and, methods learned throughout this semester to perform the appropriate tests for the identification of the assigned unknown bacteria. Add more background information here!!! The most important tools and techniques used during this identification include aseptic technique, microscopic examination and, the use of selective and differential media. Aseptic technique is an important tool for microbiologists. It is imperative that aseptic technique is maintained throughout the length of any test to avoid any cross-contamination that may lead to inaccurate results.
In this experiment, we cultivated an unknown specimen containing two microorganisms. The purpose of this experiment was to use a variety of biochemical test previously learned in the lab to identify the unknown bacteria. The identification of unknown bacteria is a major part of microbiology. Microbiologist observe samples such as blood and sputum in the laboratory for the presence of microorganisms. Identifying unknown bacteria is extremely important in clinical settings because it helps physicians find treatment for infections.
coli bacteria new traits. The pGLO plasmid that is being transformed into these cells contains genes that can give colonies of bacteria the ability of antibiotic resistance and a green fluorescent glow. Four different models were prepared and plated on multiple agar plate. After the bacteria was grown for three days in an incubator at 37°C; observations were made and recorded (Table 1). All of the plates were looked at for the amount of colonies grown, if growth was present, and if the colonies gained the ability to glow green.
These microorganisms are used to teach us how multicellular organisms came to be and how they can survive today. These small, microscopic organisms are so unique that the identification of them is paramount in the advancements of science. Knowing the chemical makeup, the shape, and the biochemical processes is important in identifying these organisms to understand how they survive and where. A number of tests can be ran on an unknown bacteria to determine their ideal
My bacterium turned out to be gram positive. When conducting these tests, I only had to do the coagulase test and the catalase test because when doing the catalase test, the reaction was that it had bubbled. If it did not bubble, or have a positive reaction, then I would not have had to do the coagulase test. Also, since my bacterium caused a positive catalase test, I only had to do the coagulase test and no other tests. This is because with staphylococcus organisms, these are the only tests
Each plate serves as a first step to identify the unknowns. The TSA (tryptic soy agar) can be used to do a gram stain, which differentiates gram-negatives from gram-positives, based on the structural make up of the cell wall (Carson, 2015). The blood agar plate is used to test for hemolytic activity, which is useful for distinguishing gram-positives. A MacConkey plate is selective by inhibiting the growth of gram-positives and differential due to the fermentation of lactose by certain gram-negative species. In the
Bacterial transformation is a technique widely practiced by scientists for research purposes. This experiment explored the transformation of E. coli cultures with pGLO plasmids to allow the bacterial cells to express a foreign protein and emit a fluorescent glow under UV light. The transformation was completed through the heat shock method. Both transformed and untransformed E. coli cultures were grown in four mediums. The four mediums were made of different combinations of the LB nutrient broth, ampicillin and arabinose C sugar.
The unknown bacteria was then tested on multiple selective and differential media. Growth was present on the MacConkey Agar and the colonies were the same color as the plate, which told me my bacteria was gram negative and did not ferment lactose. There was no growth on the Mannitol Salt Agar, and this told me the unknown was not salt tolerant and did not
The second ½ of the organism was used for gram staining. The gram stain method was performed on the unknown organism per lab manual page 42 and two gram stain reactions were identified. Organism B was gram positive cocci in grape like clusters. Because organism B was positive I could eliminate Escherichia coli, Enterobacter aerogenes and Proteus vulgaris because these bacteria would be rod shapes. Organism A was gram negative pink rod shaped and because of gram positive morphology I could eliminate Staphylococcus aureus, Streptococcus lactis and Bacillus subtilis.
The streaking technique used was a modified streaking for isolation with a heavy quadrant one. The result revealed that bacteria is alpha, with an incomplete breakdown of the medium with a susceptibility of 17mm from the bacitracin gamma hemolysis. That is why the organism represented by the bar graph was in low numbers because it was incomplete. The other test was DNase agar, it is an enzyme test used to identify if the organism has the enzyme DNA. The streaking technique is a single straight line down the middle of the plate.
6.1.1:- Synthesis of Isoxazoline derivatives :- Isoxazoline are five member heterocyclic compound. isoxazole and their derivatives have received much attention because of their wide application in medicine and pesticide chemistry. Many isoxazole compound including oxacillin sulfamethoxazole have been developed as pesticides and drugs. Isoxazoline derivative synthesized by various ways [1-2]. K.S.Kumaret.al[3] reported the synthesis of isoxazolines from newly substituted chalcone by reaction with hydroxylamine hydrochloride .
After experiment on microscope under oil immersion, I learned that my Unknown is gram positive. Under the lens, the bacteria appears in purple color. Its morphology is cocci arranged in cluster. However, during decolorizing process, I put too much alcohol to the crystal violet-iodine complex making the color overly removed. That led to the result of my gram positive has slightly redish
Biochemical tests are the tests used for the identification of bacterial species based on the differences in the biochemical activities of different bacteria. Bacterial physiology differs from one species to the other. These differences in carbohydrate metabolism, protein metabolism, fat metabolism, production of certain enzymes and ability to utilize a particular compound help them to be identified by the biochemical tests. Gram’s stain was originally devised by histologist Hans Christian Gram in 1884. Gram-positive bacteria stain purple, while Gram-negative bacteria stain pink when subjected to Gram staining.
This can be tested by simply mixing the serum of suspected individual which contain the antibodies with the antigens of specific bacteria the accumulation of clumps confirms the presence of particular bacterial infection.[2] This test can be performed in various ways including slide agglutination reaction, tube agglutination reaction, indirect agglutination inhibition reactions etc. Another important practical application involves blood group test of