The purpose of this experiment is to learn about the principles of protein assays as well as to learn how to utilize the Beer-Lambert Law by doing various calculations such as how to calculate absorbencies, concentrations, and extinction coefficients. According to the Beer Lambert Law, absorbance is proportional to path length and concentration. For this experiment we will be learning how to use a spectrophotometer which measures transmitted light intensity. Spectrophotometers measure wavelength based on the color produced. In addition, we will be using standard curves to calculate protein concentrations. This experiment is extremely beneficial to biochemists because determining the amount of protein in a solution is crucial. Also, because spectrophotometers are useful for determining the substances that …show more content…
It is clear that each method will provide different advantages and disadvantages being that there are protein assays that are dye binding and those that are based on alkaline copper (lab manual). The first will be the Absorbance at 280 nm which is a quick method that is used to find protein peaks. Proteins that contain tyrosine, phenylalanine, and tryptophan have a strong absorbance for UV light at 280 nm. According to the Material Safety Data Sheet, tyrosine can be slightly hazardous in the case of skin contact. In addition, phenylalanine can be hazardous if it comes into contact with eyes, if it is ingested, or if it is inhaled. Additionally, tryptophan may cause skin or eye irritation. Equipment used in this method include the spectrophotometer, quartz cuvette, and disposable pasteur pipette. To begin this method we set the spectrophotometer to 280 nm and allow it to warm up for a period of 30 minutes. Then we set it to zero with a buffer. We then remove the blank buffer, add a protein sample, and then read the absorbance (lab
Compare the result to the chart on the back of the urinary pH test strips bottle, and record data. Clean the stirring rod with water before moving on to the next test tube. Repeat this process for each increment (2 mL, 3mL, 4mL) Figure #1: Picture of bean solution mixed Figure #2: Picture of materials needed for the with alpha galactosidase experiment Safety considerations: Be careful with the beakers, glass stirring rod, and test tubes, as they could break easily and can cause cuts in the skin. DCP: A scatter plot will be used to display how the amount of alpha galactosidase (measured in mL) in the bean solution affects the glucose concentration (measured in mg/dL) and error bars to show the standard deviation.
Procedure Activity 1: Fill 6 large beaker halfway with distilled water, making sure all beakers have equal amounts of water. Cut 6 30 cm dialysis bags and label each bag with a letter, A through F. Fill each dialysis bag with 15 mL of solution A through F that corresponds with the lab on each bag. For example, bag A is filled with solution A. Measure the mass of each dialysis bag and record masses of each bag in BILL. Cover the beakers with paper towel and leave the bags in the beakers overnight. Remove the dialysis bags from the beakers and let dry.
H and S were diluted 20x and P1 and P2 were diluted 2x to make up a total volume of 1ml each. 50ul of each diluted sample was pipetted into 8 wells of the microplate and 50ul of each protein standard was pipetted into 2 wells. 50ul were incubated with 50ul of alkaline copper reagent. 50ul of alkaline copper reagent was added to every well containing water, buffer, sample or standard and was incubated for 30 minutes. 100ul of Folin reagent was added to the wells and incubated for another 20 minutes.
If the type of food is solid, then break it down into small little pieces. Then apply 5 drops of Biuret solution into each regular test tubes. Gently mix the substances within the test tubes and record their color. If the color of the food becomes blue-violet or pink, then there are proteins. To test for Iodine solution for starch, first empty and wash the test tubes from the previous solution and refill each tubes with food.
Blue light showed the highest absorbance. Finally we found the chromatography pigments of different bands based on the separation of photosynthetic pigments. Methods Materials The materials used in the
Starch solution is then placed into the test tube at a quantity of 5 mL. 5 drops of Lugol’s Iodine solution is added to the test tube. If the color changes, then it is known that starches are present in the solution. Proteins are next tested. In order to do this, 5 mL of gelatin solution is added to the test tube. 10 drops of Biuret’s reagent are added to test for protein.
There should be eight test tubes in total on each side; four amylase and four starch test tubes labeled. Prepare the spot plate, labeling each side with the correct time and
From my findings we notice that the R2 value is 0.886 (shown in Figure 1) which indicates that there is a strong correlation between concentration of salivary amylase and how much light is absorbed. This suggest that due to the large amount of salivary
A laptop was then turned and connected to a spectrophotometer, via USB, to collect data. The Logger Pro program was opened on the laptop, and “Experiment” was selected. Once “Experiment” was selected, “Data Collection” was chosen, and the means by which the data would be collected was “Time Base.” The “duration” of time for this experiment was selected to be 30 minutes. The rate at which data was collected was ensured to be “1 samples/minute” and “1 minutes/sample.”
Indicators are chemical compounds used to detect the presence of other compounds. Indicators are easy, quick and cost efficient way to test for macromolecules present (or absent) in compounds and solutions. There are several indicators which can be used however only three will be discussed and used in this experiment. Iodine detects starch and can therefore be used to test for carbohydrates, Sudan III detects water insoluble substances and thus is used to test for lipids and Biuret & Copper sulphate detects peptide bonds and is used to test for proteins. These compounds change to a unique colour when they come into contact with their designated macromolecule and this is used in labs to identify the macromolecules present in solutions (A colour change of an indicator is usually a positive test for the presence of an organic compound).
Prior to loading any protein sample, HIC was washed using four different solutions including equilibrium buffer (a highly salt solution 2M (NH4)2SO4), binding buffer (a very high salt solution 4M (NH4)2SO4), Wash buffer (a medium salt solution 1.3M (NH4)2SO4), and TE (elution) buffer (a very low salt solution 10 mM Tris/EDTA). According to the protein chromatography protocol, to prepare the chromatography column, the HIC column shook vigorously to resuspend the beads, the top cap was removed, and the bottom tap was snapped off, allowing the liquid buffer to drain (took 3-5 minutes). Then 2 mL of equilibrium buffer (i.e. 1 mL at a time) was added. The equilibrium buffer was allowed to drain until it reached the 1 mL mark above the white beads, then the column was recapped at each side and stored at room temperature for further
5 water bath were set up each to10 °C. (5 were used do the experiment faster) 5 cm3 of starch solution were added into the 5 test tubes that were labeled test tubes. Then 5 cm3 of amylase enzyme was added into the other 5 test tubes that were labeled. Put one of the starch solution test tube (preferably the one labeled 1) and one of the test tube containing amylase into the water bath (10 °C).
We added 50ml of the buffer into the flask, and we boiled the solution for two minutes in the microwave. The sample well was taped with table and par film to keep the agarose gel from leaking. I loaded the 15ul of the five serum proteins: Cow serum, Serum albumin, Transferrin and Gamma globulins. The electrophoresed gel was placed on the voltage machine at 110 volts for 1.5hours. We removed the gel from the sample well and place the Coomassie Blue stain.
For TLC profiling, 4 TLC plates were prepared for the testing of each solvent. As shown in Figure 1, the green food dye was placed at the bottom center, specifically 0.5 cm away from the bottom of the plate, with the use of a capillary tube. Each one of the silica plates were then vertically placed in a small beaker with its inside surrounded by a filter paper saturated with the solvent to be tested and a small amount of the same solvent at the bottom. The TLC plate was then taken out when the rising solvent was about to reach the top of plate. The ammonia: 1-butanol solvent was tested 7 times due to some personal
Introduction The topic that will be discussed is biometry/biostatistics. Biostatistics encompasses a lot of different fields put together. It is important in medicine, pharmacy, agricultural and fishery. It is useful because combines two subjects together(Biology and Mathematic), not only that, it is also used to improve different assortments of analytical methods. Biological Perspective of Biostatistics